Index

A | B | C | D | E | F | H | I | K | L | M | O | P | R | S | T | U | V | W

A

addh() (pybel.Molecule method)
Atom (class in pybel)
atomicmass (pybel.Atom attribute)
atomicnum (pybel.Atom attribute)
atoms (pybel.Molecule attribute)

B

bits (pybel.Fingerprint attribute)

C

calcdesc() (pybel.Molecule method)
calcfp() (pybel.Molecule method)
charge (pybel.Molecule attribute)
clear() (pybel.MoleculeData method)
close() (pybel.Outputfile method)
conformers (pybel.Molecule attribute)
coords (pybel.Atom attribute)

D

data (pybel.Molecule attribute)
descs (in module pybel)
dim (pybel.Molecule attribute)
draw() (pybel.Molecule method)

E

energy (pybel.Molecule attribute)
exactmass (pybel.Atom attribute)
(pybel.Molecule attribute)

F

findall() (pybel.Smarts method)
Fingerprint (class in pybel)
forcefields (in module pybel)
formalcharge (pybel.Atom attribute)
formula (pybel.Molecule attribute)
fps (in module pybel)

H

has_key() (pybel.MoleculeData method)
heavyvalence (pybel.Atom attribute)
heterovalence (pybel.Atom attribute)
hyb (pybel.Atom attribute)

I

idx (pybel.Atom attribute)
implicitvalence (pybel.Atom attribute)
informats (in module pybel)
isotope (pybel.Atom attribute)
items() (pybel.MoleculeData method)
iteritems() (pybel.MoleculeData method)

K

keys() (pybel.MoleculeData method)

L

localopt() (pybel.Molecule method)

M

make3D() (pybel.Molecule method)
Molecule (class in pybel)
MoleculeData (class in pybel)
molwt (pybel.Molecule attribute)

O

operations (in module pybel)
outformats (in module pybel)
Outputfile (class in pybel)

P

partialcharge (pybel.Atom attribute)
pybel (module)

R

readfile() (in module pybel)
readstring() (in module pybel)
removeh() (pybel.Molecule method)

S

Smarts (class in pybel)
spin (pybel.Atom attribute)
(pybel.Molecule attribute)
sssr (pybel.Molecule attribute)

T

title (pybel.Molecule attribute)
type (pybel.Atom attribute)

U

unitcell (pybel.Molecule attribute)
update() (pybel.MoleculeData method)

V

valence (pybel.Atom attribute)
values() (pybel.MoleculeData method)
vector (pybel.Atom attribute)

W

write() (pybel.Molecule method)
(pybel.Outputfile method)